miRBase entry: pbv-mir-19a

Stem-loop pbv-mir-19a


Accession
MI0030164
Description
Python bivittatus pbv-mir-19a precursor miRNA


Sequence

gcaguccucuguuAGUUUUGCAUAGUUGCACUAcaggaagaguguaguUGUGCAAAUCUAUGCAAAACUGAuuguggccuguua
((((.((.(.(((((((((((((((((((((((((.......))))...))))))..))))))))))))))).).)).))))..

Structure
--    u  u u               --      ---    gg 
  gcag cc c guuAGUUUUGCAUAG  UUGCAC   UAca  a
  |||| || | |||||||||||||||  ||||||   ||||  a
  uguc gg g uAGUCAAAACGUAUC  AACGUG   augu  g
au    c  u u               UA      Uug    ga 


Annotation confidence Not enough data
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Genome context
KE958468.1: 77858-77941 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from pbv-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-19a-5p

Accession MIMAT0038843
Description Python bivittatus pbv-miR-19a-5p mature miRNA
Sequence 14 - AGUUUUGCAUAGUUGCACUA - 33
Evidence experimental
Illumina [1]

Mature pbv-miR-19a-3p

Accession MIMAT0038844
Description Python bivittatus pbv-miR-19a-3p mature miRNA
Sequence 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196