miRBase entry: pbv-mir-30e

Stem-loop pbv-mir-30e


Accession
MI0030188
Description
Python bivittatus pbv-mir-30e precursor miRNA


Sequence

ugggcaguuguugcuccUGUAAACAUCCUUGACUGGAAGCUguacaggcucaaagaggCUUUCAGUCGGAUGUUUACAGCggcaggcugccacaa
((((((((..(((((.((((((((((((..(((((((((((...............))))))))))))))))))))))).))))))))))).)).

Structure
-  -      ug     c            UU           guacag 
 ug ggcagu  uugcu cUGUAAACAUCC  GACUGGAAGCU      g
 || ||||||  ||||| ||||||||||||  |||||||||||      c
 ac ccgucg  gacgg GACAUUUGUAGG  CUGACUUUCgg      u
a  a      --     C            --           agaaac 


Annotation confidence Not enough data
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Genome context
KE952992.1: 282979-283073 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-30e-5p

Accession MIMAT0038878
Description Python bivittatus pbv-miR-30e-5p mature miRNA
Sequence 18 - UGUAAACAUCCUUGACUGGAAGCU - 41
Evidence experimental
Illumina [1]

Mature pbv-miR-30e-3p

Accession MIMAT0038879
Description Python bivittatus pbv-miR-30e-3p mature miRNA
Sequence 59 - CUUUCAGUCGGAUGUUUACAGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196