miRBase entry: pbv-mir-34c

Stem-loop pbv-mir-34c

Accession

MI0030195

Description

Python bivittatus pbv-mir-34c precursor miRNA

Sequence

caucagccuugucaccAGGCAGUGUAGUUAGCUGAUUGAcaaaggcaacAGUCGCUAACAACACAGCCAAGUgaaaaggcugccu
...(((((((.((((..(((.((((.((((((.(((((..........))))))))))).)))).)))..)))).)))))))...

Structure

cau       g    cA   A    A      U     Acaa 
   cagccuu ucac  GGC GUGU GUUAGC GAUUG    a
   ||||||| ||||  ||| |||| |||||| |||||     
   gucggaa agUG  CCG CACA CAAUCG CUGAc    g
ucc       a    AA   A    A      -     aacg

Annotation confidence Not enough data

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Genome context

KE957210.1: 113002-113086 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-34c-5p

Accession	MIMAT0038887
Description	Python bivittatus pbv-miR-34c-5p mature miRNA
Sequence	17 - AGGCAGUGUAGUUAGCUGAUUGA - 39
Evidence	experimental Illumina [1]

Mature pbv-miR-34c-3p

Accession	MIMAT0038888
Description	Python bivittatus pbv-miR-34c-3p mature miRNA
Sequence	50 - AGUCGCUAACAACACAGCCAAGU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196