miRBase entry: pbv-mir-96

Stem-loop pbv-mir-96


Accession
MI0030199
Description
Python bivittatus pbv-mir-96 precursor miRNA


Sequence

ccugcuuggcccuuUUUGGCACUAGCACAUUUUUGCUguucucuauaaacauugagCAAUUAUGUGUAGUGCCAAUAUgggagaagucaga
.((((((..(((...(((((((((.(((((..(((((.................)))))..))))))))))))))...)))..))).))).

Structure
c   -   gg   uuU         G     UU     guucucu 
 cug cuu  ccc   UUGGCACUA CACAU  UUGCU       a
 ||| |||  |||   ||||||||| |||||  |||||       u
 gac gaa  ggg   AACCGUGAU GUGUA  AACga       a
a   u   ga   UAU         -     UU     guuacaa 


Annotation confidence Not enough data
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Genome context
KE958924.1: 47968-48058 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pbv-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-96-5p

Accession MIMAT0038891
Description Python bivittatus pbv-miR-96-5p mature miRNA
Sequence 15 - UUUGGCACUAGCACAUUUUUGCU - 37
Evidence experimental
Illumina [1]

Mature pbv-miR-96-3p

Accession MIMAT0038892
Description Python bivittatus pbv-miR-96-3p mature miRNA
Sequence 57 - CAAUUAUGUGUAGUGCCAAUAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196