miRBase entry: pbv-mir-130a

Stem-loop pbv-mir-130a


Accession
MI0030223
Description
Python bivittatus pbv-mir-130a precursor miRNA


Sequence

ggcacggccccugcccgAGGCUCUUUUCACAUUGUGCUacugagcccaacccaagCAGUGCAAUGUAAAAAGGGCAUUGgguugguggccacag
.....((((((.((((((.((((((((.((((((((((.((............)).)))))))))).)))))))).)))))).)).))))....

Structure
ggcac    -  u      G        C          a  gagcc 
     ggcc cc gcccgA GCUCUUUU ACAUUGUGCU cu     c
     |||| || |||||| |||||||| |||||||||| ||      
     ccgg gg uggGUU CGGGAAAA UGUAACGUGA ga     a
-gaca    u  u      A        A          C  accca 


Annotation confidence Not enough data
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Genome context
KE953228.1: 125022-125115 [+]

Database links

Mature pbv-miR-130a-5p

Accession MIMAT0038926
Description Python bivittatus pbv-miR-130a-5p mature miRNA
Sequence 18 - AGGCUCUUUUCACAUUGUGCU - 38
Evidence experimental
Illumina [1]

Mature pbv-miR-130a-3p

Accession MIMAT0038927
Description Python bivittatus pbv-miR-130a-3p mature miRNA
Sequence 56 - CAGUGCAAUGUAAAAAGGGCAUUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196