miRBase entry: pbv-mir-133a-2

Stem-loop pbv-mir-133a-2


Accession
MI0030229
Description
Python bivittatus pbv-mir-133a-2 precursor miRNA


Sequence

caaugcuuugcuuaAGCUGGUAAAAUGGAAUCAAAUcacauguuuaauggaUUUGGUCCCCUUCAACCAGCUGUagcuauguauugau
((((((...(((..(((((((..((.((.((((((((.(((.....))))))))))).)).))..)))))))..)))...))))))..

Structure
--      uuu   ua       AA  U  A        a   g 
  caaugc   gcu  AGCUGGU  AA GG AUCAAAUc cau u
  ||||||   |||  |||||||  || || |||||||| ||| u
  guuaug   cga  UCGACCA  UU CC UGGUUUag gua u
ua      uau   UG       AC  C  C        -   a 


Annotation confidence Not enough data
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Genome context
KE953557.1: 28060-28147 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-133a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-133a-3p

Accession MIMAT0038936
Description Python bivittatus pbv-miR-133a-3p mature miRNA
Sequence 52 - UUUGGUCCCCUUCAACCAGCUGU - 74
Evidence experimental
Illumina [1]

Mature pbv-miR-133a-2-5p

Accession MIMAT0038937
Description Python bivittatus pbv-miR-133a-2-5p mature miRNA
Sequence 15 - AGCUGGUAAAAUGGAAUCAAAU - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196