Stem-loop pbv-mir-138-1

Accession

MI0030237

Description

Python bivittatus pbv-mir-138-1 precursor miRNA

Sequence

uauuguugcugcAGCUGGUGUUGUGAAUCAGGCCGacauaaagugcaucuuacuauccgGCUAUUUCACUACACCAGGGUcgcaucguac
....(.(((.((..(((((((.(((((...(((((.....(((.....)))......)))))..))))).))))))).)).))).)....

Structure

uauu u   u  AG       U     UCA     -acaua   u 
    g ugc gc  CUGGUGU GUGAA   GGCCG      aag g
    | ||| ||  ||||||| |||||   |||||      ||| c
    c acg UG  GACCACA CACUU   UCGgc      uuc a
caug u   c  -G       U     -UA     cuauca   u 

Annotation confidence Not enough data

Genome context

KE955447.1: 122439-122528 [+]

Mature pbv-miR-138-5p

• Accession: MIMAT0038949
• Description: Python bivittatus pbv-miR-138-5p mature miRNA
• Sequence: 13 - AGCUGGUGUUGUGAAUCAGGCCG - 35
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-138-3p

• Accession: MIMAT0038950
• Description: Python bivittatus pbv-miR-138-3p mature miRNA
• Sequence: 60 - GCUAUUUCACUACACCAGGGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196