miRBase entry: pbv-mir-193b

Stem-loop pbv-mir-193b

Accession

MI0030266

Description

Python bivittatus pbv-mir-193b precursor miRNA

Sequence

aggcugugaauccggggccggggcuuugggggcgagaugagcuugcccgguauccAACUGGCCCACAAAGUCCCGCUUcuggggucaccuucuuc
.....((((.(((((((.((((((((((((((((((.....)))))(((((.....)))))))).)))))))))).))))))).)))).......

Structure

--aggcu    a       c          -   gcgagaugagcuugc     a 
       guga uccgggg cggggcuuug ggg               ccggu u
       |||| ||||||| |||||||||| |||               ||||| c
       cacu gggucUU GCCCUGAAAC CCC               GGUCA c
cuucuuc    g       C          A   ---------------     A

Annotation confidence Not enough data

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Genome context

KE956029.1: 153-247 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-193b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-193b-3p

Accession	MIMAT0038991
Description	Python bivittatus pbv-miR-193b-3p mature miRNA
Sequence	56 - AACUGGCCCACAAAGUCCCGCUU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196