miRBase entry: pbv-mir-194-1

Stem-loop pbv-mir-194-1


Accession
MI0030267
Description
Python bivittatus pbv-mir-194-1 precursor miRNA


Sequence

acgguguuaucaagUGUAACAGCAACUCCAUGUGGAauaagccucuuuccaguggaggugguguuacuuuugaaagccacugac
.(((((((.(((((.((((((.((.((((((.(((((.........))))))))))).)).)))))).))))).)).)))))..

Structure
-a     -  a     U      G  A      G     uaa 
  cggug uu ucaag GUAACA CA CUCCAU UGGAa   g
  ||||| || ||||| |||||| || |||||| |||||   c
  gucac ga aguuu cauugu gu gaggug accuu   c
ca     c  a     u      g  g      -     ucu 


Annotation confidence Not enough data
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Genome context
KE955471.1: 57450-57533 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-194-5p

Accession MIMAT0038992
Description Python bivittatus pbv-miR-194-5p mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196