miRBase entry: pbv-mir-212

Stem-loop pbv-mir-212

Accession

MI0030286

Description

Python bivittatus pbv-mir-212 precursor miRNA

Sequence

cgggACCUUGGCUCUAGACUGCUUACUgcuacaggcaaugagagacacagUAACAGUCUACAGUCAUGGCuacugaagucuggcaguggc
.....((.(((((.(((((((.((((((((.((.....))..))...))))))))))))).))))).))((((((........)))))).

Structure

----------------cgggA  U     C       C      ---  -a  g 
                     CC UGGCU UAGACUG UUACUg   cu  ca g
                     || ||||| ||||||| ||||||   ||  || c
                     GG ACUGA AUCUGAC AAUgac   ga  gu a
cggugacggucugaagucauC  U     C       -      aca  ga  a

Annotation confidence Not enough data

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Genome context

KE962683.1: 12379-12468 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-212

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-212-5p

Accession	MIMAT0039016
Description	Python bivittatus pbv-miR-212-5p mature miRNA
Sequence	5 - ACCUUGGCUCUAGACUGCUUACU - 27
Evidence	experimental Illumina [1]

Mature pbv-miR-212-3p

Accession	MIMAT0039017
Description	Python bivittatus pbv-miR-212-3p mature miRNA
Sequence	51 - UAACAGUCUACAGUCAUGGC - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196