miRBase entry: pbv-mir-215

Stem-loop pbv-mir-215

Accession

MI0030288

Description

Python bivittatus pbv-mir-215 precursor miRNA

Sequence

augagguccaggguaAUGACCUAUGAUUUGACAGACUgugcuauguaagucugCCUGUCAUUUCUGUAGGCCAAUAcucugcauaucuuc
..(((((.(((((((.((.(((((((..((((((.(.(.(((.....)))).).))))))..)).))))).)).)))))))...))))).

Structure

au     --c       A  A     -  UU      A U u   a 
  gaggu   cagggua UG CCUAU GA  UGACAG C g gcu u
  |||||   ||||||| || ||||| ||  |||||| | | ||| g
  uucua   gucucAU AC GGAUG CU  ACUGUC g c uga u
-c     uac       A  C     U  UU      C u -   a

Annotation confidence Not enough data

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Genome context

KE955471.1: 57760-57849 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-215-5p

Accession	MIMAT0039020
Description	Python bivittatus pbv-miR-215-5p mature miRNA
Sequence	16 - AUGACCUAUGAUUUGACAGACU - 37
Evidence	experimental Illumina [1]

Mature pbv-miR-215-3p

Accession	MIMAT0039021
Description	Python bivittatus pbv-miR-215-3p mature miRNA
Sequence	54 - CCUGUCAUUUCUGUAGGCCAAUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196