miRBase entry: pbv-mir-216b

Stem-loop pbv-mir-216b


Accession
MI0030290
Description
Python bivittatus pbv-mir-216b precursor miRNA


Sequence

ggucccagucacagauugagAAAUCUCUGCAGGCAAAUGUGAugucaugauugcaaucucACAGUUACCAGUAGAGGUUCUgcaaucuggagggc
...(((..((.(((((((((((.(((((((.((....(((((((.((....))))...)))))....)).))))))))))).)))))))))))).

Structure
ggu   ag  a       -    A       A  CAAA     ---  u  u 
   ccc  uc cagauug agAA UCUCUGC GG    UGUGA   ug ca g
   |||  || ||||||| |||| ||||||| ||    |||||   || ||  
   ggg  ag gucuaac UCUU GGAGAUG CC    ACAcu   ac gu a
--c   --  -       g    -       A  AUUG     cua  -  u 


Annotation confidence Not enough data
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Genome context
KE953947.1: 188143-188237 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-216b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-216b-5p

Accession MIMAT0039024
Description Python bivittatus pbv-miR-216b-5p mature miRNA
Sequence 21 - AAAUCUCUGCAGGCAAAUGUGA - 42
Evidence experimental
Illumina [1]

Mature pbv-miR-216b-3p

Accession MIMAT0039025
Description Python bivittatus pbv-miR-216b-3p mature miRNA
Sequence 61 - ACAGUUACCAGUAGAGGUUCU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196