miRBase entry: pbv-mir-221

Stem-loop pbv-mir-221


Accession
MI0030296
Description
Python bivittatus pbv-mir-221 precursor miRNA


Sequence

auccagccuuugggccuugACCUGGCAUACAAUGUAGAAUACuguguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaggcugucugga
.(((((......(((((.(((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))..)))))..)))))

Structure
a     ccuuug     -u         U         AAUA    -    g 
 uccag      ggccu  gACCUGGCA ACAAUGUAG    Cugu guuu  
 |||||      |||||  ||||||||| |||||||||    |||| |||| u
 agguc      ucgga  UUGGGUCGU UGUUACAUC    GAca cgaa  
-     ----ug     cU         C         ----    a    u 


Annotation confidence Not enough data
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Genome context
KE954435.1: 198726-198819 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-221-5p

Accession MIMAT0039031
Description Python bivittatus pbv-miR-221-5p mature miRNA
Sequence 20 - ACCUGGCAUACAAUGUAGAAUAC - 42
Evidence experimental
Illumina [1]

Mature pbv-miR-221-3p

Accession MIMAT0039032
Description Python bivittatus pbv-miR-221-3p mature miRNA
Sequence 60 - AGCUACAUUGUCUGCUGGGUUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196