miRBase entry: pbv-mir-222b

Stem-loop pbv-mir-222b


Accession
MI0030298
Description
Python bivittatus pbv-mir-222b precursor miRNA


Sequence

cugaugugaacaggcUGCUCAGUAGUUGGUGUAGGAUCuguccgauaaaaccaacAGCUACAUCUGAUUACUGGGUCUccuguggcauca
.((((((..(((((..((((((((((((((((((...((((..(......)..))))))))))).)))))))))))..))))).))))))

Structure
c      ga     cU           -       GAU    cc au 
 ugaugu  acagg  GCUCAGUAGUU GGUGUAG   Cugu  g  a
 ||||||  |||||  ||||||||||| |||||||   ||||  |   
 acuacg  ugucc  UGGGUCAUUAG CUACAUC   GAca  c  a
-      -g     UC           U       ---    ac aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KE955174.1: 151344-151433 [+]

Database links

Mature pbv-miR-222b-5p

Accession MIMAT0039035
Description Python bivittatus pbv-miR-222b-5p mature miRNA
Sequence 16 - UGCUCAGUAGUUGGUGUAGGAUC - 38
Evidence experimental
Illumina [1]

Mature pbv-miR-222b-3p

Accession MIMAT0039036
Description Python bivittatus pbv-miR-222b-3p mature miRNA
Sequence 56 - AGCUACAUCUGAUUACUGGGUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196