miRBase entry: pbv-mir-301b

Stem-loop pbv-mir-301b


Accession
MI0030301
Description
Python bivittatus pbv-mir-301b precursor miRNA


Sequence

cugcuggaaccgcuggcucugacaauguugcacuacuguuuucacaaauuuagCAGUGCAAUAAUAUUGUCAAAGCauuugguucuaguccug
..((((((((((...(((.(((((((((((((((.(((............))).))))))...))))))))).)))...))))))))))....

Structure
--cu          cug   c         ---      a   uuuuc 
    gcuggaaccg   gcu ugacaaugu   ugcacu cug     a
    ||||||||||   ||| |||||||||   |||||| |||      
    ugaucuuggu   CGA ACUGUUAUA   ACGUGA gau     c
gucc          uua   A         AUA      C   uuaaa 


Annotation confidence Not enough data
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Genome context
KE953167.1: 488648-488740 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-301b-3p

Accession MIMAT0039040
Description Python bivittatus pbv-miR-301b-3p mature miRNA
Sequence 54 - CAGUGCAAUAAUAUUGUCAAAGC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196