miRBase entry: pbv-mir-551b

Stem-loop pbv-mir-551b


Accession
MI0030322
Description
Python bivittatus pbv-mir-551b precursor miRNA


Sequence

accuccauuggcuccaGAAAUCAAGGCUGGGUGAGACCUcgugaagaaacuagaagGCGACCCAUACUUGGUUUCAGgagcugugaggaua
.((((...(((((((.(((((((((..(((((..(.(((..((.......))..)))).)))))..))))))))).))))))).))))...

Structure
--a    cau       a         GC     GA A   cg  aa 
   ccuc   uggcucc GAAAUCAAG  UGGGU  G CCU  ug  g
   ||||   ||||||| |||||||||  |||||  | |||  ||  a
   ggag   gucgagG CUUUGGUUC  ACCCA  C Gga  au  a
aua    --u       A         AU     -G -   ag  ca 


Annotation confidence Not enough data
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Genome context
KE956179.1: 112483-112573 [+]

Database links

Mature pbv-miR-551b-5p

Accession MIMAT0039068
Description Python bivittatus pbv-miR-551b-5p mature miRNA
Sequence 17 - GAAAUCAAGGCUGGGUGAGACCU - 39
Evidence experimental
Illumina [1]

Mature pbv-miR-551b-3p

Accession MIMAT0039069
Description Python bivittatus pbv-miR-551b-3p mature miRNA
Sequence 57 - GCGACCCAUACUUGGUUUCAG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196