miRBase entry: pbv-mir-1306

Stem-loop pbv-mir-1306

Accession

MI0030326

Description

Python bivittatus pbv-mir-1306 precursor miRNA

Sequence

augaacagccuccaccaccuccccugcaaacguccagugacgcagagguaaUGGACGUUGGCUCUGGUGGUGAuggacagucagauac
.(((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....))).....

Structure

----a   acag  uc       uccccu  a        gug  gc 
     uga    cc  caccacc      gc aacgucca   ac  a
     |||    ||  |||||||      || ||||||||   ||   
     acu    gg  GUGGUGG      CG UUGCAGGU   ug  g
cauag   gaca  uA       ---UCU  G        -aa  ga

Annotation confidence Not enough data

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Genome context

KE953903.1: 109138-109225 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-1306-3p

Accession	MIMAT0039074
Description	Python bivittatus pbv-miR-1306-3p mature miRNA
Sequence	52 - UGGACGUUGGCUCUGGUGGUGA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196