miRBase entry: pbv-mir-1788

Stem-loop pbv-mir-1788


Accession
MI0030333
Description
Python bivittatus pbv-mir-1788 precursor miRNA


Sequence

auaccuacuugugcugGGCUUGUUUUCAGUUGCCUGcggcuggcuaauaugacuCAGGCAGCUAAAGCAAGUCUGgggcaugaaaggug
.(((((...(((.(((((((((((((.(((((((((.(..............).)))))))))))))))))))))).)))....)))))

Structure
a     -acu   g             C         c gcuggc 
 uaccu    ugu cugGGCUUGUUUU AGUUGCCUG g      u
 |||||    ||| ||||||||||||| ||||||||| |       
 gugga    acg gGUCUGAACGAAA UCGACGGAC c      a
-     aagu   g             -         u aguaua 


Annotation confidence Not enough data
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Genome context
KE952971.1: 1064595-1064683 [-]

Database links

Mature pbv-miR-1788-5p

Accession MIMAT0039085
Description Python bivittatus pbv-miR-1788-5p mature miRNA
Sequence 17 - GGCUUGUUUUCAGUUGCCUG - 36
Evidence experimental
Illumina [1]

Mature pbv-miR-1788-3p

Accession MIMAT0039086
Description Python bivittatus pbv-miR-1788-3p mature miRNA
Sequence 55 - CAGGCAGCUAAAGCAAGUCUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196