miRBase entry: pbv-mir-3618

Stem-loop pbv-mir-3618

Accession

MI0030338

Description

Python bivittatus pbv-mir-3618 precursor miRNA

Sequence

gaaugcauugUGAUUUCCAGUAAUUGAGACAGUgauucugaaagcuguccacauuaaugaaaagaacaauguaguca
((.((((((((..(((.((.((((((.((((((..........)))))))).)))).)).)))..)))))))).)).

Structure

-  a        GA   C  G    -  A      gauu 
 ga ugcauugU  UUU CA UAAU UG GACAGU    c
 || ||||||||  ||| || |||| || ||||||     
 cu auguaaca  aaa gu auua ac cugucg    u
a  g        ag   a  a    c  -      aaag

Annotation confidence Not enough data

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Genome context

KE953903.1: 108815-108891 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-3618

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-3618-5p

Accession	MIMAT0039094
Description	Python bivittatus pbv-miR-3618-5p mature miRNA
Sequence	11 - UGAUUUCCAGUAAUUGAGACAGU - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196