miRBase entry: pbv-mir-5420

Stem-loop pbv-mir-5420


Accession
MI0030339
Description
Python bivittatus pbv-mir-5420 precursor miRNA


Sequence

acugacugagccuugcccagacaugggcacuuuucuuuuuuucuaaucuggAAAGUGCUUCAUUGUUUGGGUgaggcucugguucagg
.((((((((((((((((((((((((((((((((((..............))))))))).))).)))))))))))))))).)).)))).

Structure
a    -  -                -   -         uuuuuu 
 cuga cu gagccuugcccagaca ugg gcacuuuuc      u
 |||| || |||||||||||||||| ||| |||||||||       
 gacu gg cucggagUGGGUUUGU ACU CGUGAAAgg      c
g    u  u                U   U         ucuaau 


Annotation confidence Not enough data
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Genome context
KE954489.1: 53530-53617 [+]

Database links

Mature pbv-miR-5420-3p

Accession MIMAT0039095
Description Python bivittatus pbv-miR-5420-3p mature miRNA
Sequence 52 - AAAGUGCUUCAUUGUUUGGGU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196