miRBase entry: rno-mir-148a

Stem-loop rno-mir-148a


Accession
MI0030350
Description
Rattus norvegicus rno-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
26 open access papers mention rno-mir-148a
(46 sentences)

Sequence

30371467 reads, 38889 reads per million, 509 experiments
agccaguuuggucuuuugagacAAAGUUCUGAGACACUCUGACUCugaguaugauagaagUCAGUGCACUACAGAACUUUGucucuagaggcugugg
..(((...((((((((.((((((((((((((((.....(((((((((.......))).))))))....)).)))))))))))))).)))))))))))

Structure
ag   guu        u              -  ACACU      -   ag 
  cca   uggucuuu gagacAAAGUUCUG AG     CUGACU Cug  u
  |||   |||||||| |||||||||||||| ||     |||||| |||  a
  ggu   gucggaga cucuGUUUCAAGAC UC     GACUga gau  u
--   ---        u              A  -ACGU      a   ag 


Annotation confidence High
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Genome context
chr4: 81013269-81013365 [-]

Database links

Mature rno-miR-148a-5p

Accession MIMAT0035724
Description Rattus norvegicus rno-miR-148a-5p mature miRNA
Sequence 23 - AAAGUUCUGAGACACUCUGACUC - 45
Evidence experimental
RNAseq-metaanalysis [1]

Mature rno-miR-148a-3p

Accession MIMAT0035725
Description Rattus norvegicus rno-miR-148a-3p mature miRNA
Sequence 61 - UCAGUGCACUACAGAACUUUG - 81
Evidence experimental
RNAseq-metaanalysis [1]

References

  1. PubMed ID: 23329697
    Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
    "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
    "RNA (2013) 19:365-379