miRBase entry: rno-mir-149

Stem-loop rno-mir-149


Accession
MI0030351
Description
Rattus norvegicus rno-mir-149 precursor miRNA
Gene family
MIPF0000274; mir-149

Literature search
5 open access papers mention rno-mir-149
(12 sentences)

Sequence

225716 reads, 7233 reads per million, 471 experiments
gccggugcccgggcUCUGGCUCCGUGUCUUCACUCCCguguuuguccgaggagggagggaGGGACGGGGGCGGUGCUGgggcaacugga
.(((((((((.(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).))).)))).))))).

Structure
g     -    g   U   G      G     A     g g  u 
 ccggu gccc ggc CUG CUCCGU UCUUC CUCCC u uu g
 ||||| |||| ||| ||| |||||| ||||| ||||| | || u
 gguca cggg UCG GGC GGGGCA GGagg gaggg g ag c
a     a    G   U   G      G     -     a g  c 


Annotation confidence High
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Genome context
chr9: 100016441-100016529 [+]

Database links

Mature rno-miR-149-5p

Accession MIMAT0035726
Description Rattus norvegicus rno-miR-149-5p mature miRNA
Sequence 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
Evidence experimental
RNAseq-metaanalysis [1]

Mature rno-miR-149-3p

Accession MIMAT0035727
Description Rattus norvegicus rno-miR-149-3p mature miRNA
Sequence 61 - GGGACGGGGGCGGUGCUG - 78
Evidence experimental
RNAseq-metaanalysis [1]

References

  1. PubMed ID: 23329697
    Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
    "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
    "RNA (2013) 19:365-379