Stem-loop bfv-miR-BF1

Accession

MI0030366

Description

Bovine foamy virus bfv-miR-BF1 precursor miRNA

Sequence

UUCGGAGGAUGGCUCAUCAAGCuaaguaaggagcUCCCUGAAGCCAUAUCCGAGGC
((((((..((((((((...((((........))))...)).)))))).))))))..

Structure

--      GG      -  UCA    aag 
  UUCGGA  AUGGCU CA   AGCu   u
  ||||||  |||||| ||   ||||    
  GAGCCU  UACCGA GU   Ucga   a
CG      -A      A  CCC    gga 

Annotation confidence Not enough data

Genome context

Unknown

Mature bfv-miR-BF1-5p

• Accession: MIMAT0035753
• Description: Bovine foamy virus bfv-miR-BF1-5p mature miRNA
• Sequence: 1 - UUCGGAGGAUGGCUCAUCAAGC - 22
• Evidence: experimental ; Illumina [1]

Mature bfv-miR-BF1-3p

• Accession: MIMAT0035754
• Description: Bovine foamy virus bfv-miR-BF1-3p mature miRNA
• Sequence: 35 - UCCCUGAAGCCAUAUCCGAGGC - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24522910
   Identification of novel, highly expressed retroviral microRNAs in cells infected by bovine foamy virus
   "Whisnant AW, Kehl T, Bao Q, Materniak M, Kuzmak J, Lochelt M, Cullen BR"
   "J Virol (2014) 88:4679-4686