Stem-loop bfv-miR-BF2

Accession

MI0030367

Description

Bovine foamy virus bfv-miR-BF2 precursor miRNA

Sequence

UCAGUAGAAAGACAGUACCUCGCCUguauagguucgaggUCAGGCGGUAUGCUUUCUACUUUuu
..(((((((((.((.((((..(((((..............))))))))))))))))))))....

Structure

--UC         A  G    UC     uauagg 
    AGUAGAAAG CA UACC  GCCUg      u
    ||||||||| || ||||  |||||       
    UCAUCUUUC GU AUGG  CGGAC      u
uuUU         -  -    --     Uggagc 

Annotation confidence Not enough data

Genome context

Unknown

Mature bfv-miR-BF2-5p

• Accession: MIMAT0035755
• Description: Bovine foamy virus bfv-miR-BF2-5p mature miRNA
• Sequence: 1 - UCAGUAGAAAGACAGUACCUCGCCU - 25
• Evidence: experimental ; Illumina [1]

Mature bfv-miR-BF2-3p

• Accession: MIMAT0035756
• Description: Bovine foamy virus bfv-miR-BF2-3p mature miRNA
• Sequence: 40 - UCAGGCGGUAUGCUUUCUACUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24522910
   Identification of novel, highly expressed retroviral microRNAs in cells infected by bovine foamy virus
   "Whisnant AW, Kehl T, Bao Q, Materniak M, Kuzmak J, Lochelt M, Cullen BR"
   "J Virol (2014) 88:4679-4686