Stem-loop tae-MIR1122b

Accession

MI0030368

Description

Triticum aestivum tae-MIR1122b precursor miRNA

Literature search

9 open access papers mention tae-MIR1122b
(35 sentences)

Sequence

15765 reads, 373.0 reads per million, 227 experiments

uuauacucccUCUGUUCCUAAAUGUAAGUCUUuuuagagauuucacugcaaaauacauacggauguauauggacauauuuuagaguauagauucacgcauuuugauccguaucuaguccauagugaaaucccuaaaaagACUUAUAUGUAGGAACGGAgggaguaaau
...(((((((((((((((((.((((((((((((((((.((((((((((.....((.((((((((....(((.....((((........)))).....)))....)))))))).)).....)))))))))).)))))))))))))))).)))))))))))))))))...

Structure

uua                 A                a          caaaa  c        guau   gacau    uag 
   uacucccUCUGUUCCUA AUGUAAGUCUUuuuag gauuucacug     ua auacggau    aug     auuu   a
   ||||||||||||||||| |||||||||||||||| ||||||||||     || ||||||||    |||     ||||    
   augagggAGGCAAGGAU UAUAUUCAgaaaaauc cuaaagugau     au uaugccua    uac     uaga   g
uaa                 G                c          accug  c        guuu   gcacu    uau 

Annotation confidence Low

Genome context

5D: 123186454-123186621 [+]

Mature tae-miR1122b-5p

• Accession: MIMAT0056506
• Description: Triticum aestivum tae-miR1122b-5p mature miRNA
• Sequence: 11 - UCUGUUCCUAAAUGUAAGUCUU - 32
• Evidence: experimental ; unknown

Mature tae-miR1122b-3p

• Accession: MIMAT0035757
• Description: Triticum aestivum tae-miR1122b-3p mature miRNA
• Sequence: 140 - ACUUAUAUGUAGGAACGGA - 158
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289