Stem-loop sequence tae-MIR1127b

Accession

MI0030379 (change log)

Description

Triticum aestivum miR1127b stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

7 open access papers mention tae-MIR1127b
(20 sentences)

Stem-loop

   c    caga g                      c  ---------     c     a    gacuua 
5'  auga    u cuucuguccggaaauacuuguc ua         gaaau ggugu ucua      u
    ||||    | |||||||||||||||||||||| ||         ||||| ||||| ||||      u
3'  uauu    a ggaggcaggucuuuaugaacag au         uuuua cuaca agau      u
   a    -aug g                      a  auuuaccua     c     c    auuaau 

Deep sequencing

195059 reads, 572 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: 2A: 6474469-6474595 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030379

Mature sequence tae-miR1127b-3p

• Accession: MIMAT0035769
• Sequence: 97 - acaaguauuucuggacggagg - 117
• Deep sequencing: 183489 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24734873 "Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)" Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H BMC Genomics. 15:289(2014).