miRBase entry: tae-MIR167c

Stem-loop tae-MIR167c


Accession
MI0030399
Description
Triticum aestivum tae-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
28 open access papers mention tae-MIR167c
(122 sentences)

Sequence

1197491 reads, 6035 reads per million, 116 experiments
ccuuugcuggugugagagacUGAAGCUGCCAGCAUGAUCUGCucauccagcaugcgccgaaaccgcguucgguugcgcgggguuaucuuggaauuuuugcuccaucagaucaugcugcagcuucauuuucucacggccaccaacaga
.(((((.((((((((((((.(((((((((.(((((((((((...((((.((..((((((((......))))).))))).)))).....((((........)))).)))))))))))))))))))).)))))))).)))).))).)).

Structure
c  -   c    -        c         C           -------------------Cuc    a  au   -     ac 
 cu uug uggu gugagaga UGAAGCUGC AGCAUGAUCUG                      aucc gc  gcg ccgaa  c
 || ||| |||| |||||||| ||||||||| |||||||||||                      |||| ||  ||| |||||   
 ga aac accg cacucuuu acuucgacg ucguacuagac                      uggg cg  cgu ggcuu  g
a  c   c    g        u         -           uaccucguuuuuaagguucuau    g  --   u     gc 


Annotation confidence High
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Genome context
6D: 53810988-53811134 [+]

Database links

Mature tae-miR167c-5p

Accession MIMAT0035789
Description Triticum aestivum tae-miR167c-5p mature miRNA
Sequence 21 - UGAAGCUGCCAGCAUGAUCUGC - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24734873
    Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
    Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
    BMC Genomics (2014) 15:289