Stem-loop bra-MIR156b

Accession

MI0030548

Description

Brassica rapa bra-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156b
(150 sentences)

Sequence

gagugcugaggaauugauggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcauauuugaagaugucaugcuugaagcuauguguGCUCACUCUCUAUCUGUCACCgccuucucuc
.......(((((...(.((((((((((((((((((((((((((((((....(((..((((((........)).))))..))))))))))))))))))))))).))))))))))).)))))..

Structure

gagugcu     auu a          -                    ggcu   uu    -  uug 
       gagga   g uggUGACAGA AGAGAGUGAGCACacauggu    uuc  gcau au   a
       |||||   | |||||||||| ||||||||||||||||||||    |||  |||| ||    
       cucuu   c gCCACUGUCU UCUCUCACUCGuguguaucg    aag  cgua ug   a
-----cu     --c -          A                    ----   uu    c  uag 

Annotation confidence Not enough data

Genome context

chrA6: 17880337-17880458 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR156b

Mature bra-miR156b-5p

• Accession: MIMAT0035818
• Description: Brassica rapa bra-miR156b-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; Illumina [1]

Mature bra-miR156b-3p

• Accession: MIMAT0035819
• Description: Brassica rapa bra-miR156b-3p mature miRNA
• Sequence: 92 - GCUCACUCUCUAUCUGUCACC - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146