miRBase entry: bra-MIR156c

Stem-loop bra-MIR156c


Accession
MI0030549
Description
Brassica rapa bra-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
16 open access papers mention bra-MIR156c
(148 sentences)

Sequence

cgcauagaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguucgaugcauuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuccggcu
.((...(((.(((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).)))..)).

Structure
c  aua   a        -    -         a   ---     cuu     g 
 gc   gaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
 ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
 cg   cuu GACUGUCU UCUC UCACUCGug guu   uucgu   acgua c
u  -gc   A        A    G         c   cuc     -uu     g 


Annotation confidence Not enough data
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Genome context
chrA3: 28490294-28490397 [-]

Database links

Mature bra-miR156c-5p

Accession MIMAT0035820
Description Brassica rapa bra-miR156c-5p mature miRNA
Sequence 12 - UGACAGAAGAGAGUGAGCAC - 31
Evidence experimental
Illumina [1]

Mature bra-miR156c-3p

Accession MIMAT0035821
Description Brassica rapa bra-miR156c-3p mature miRNA
Sequence 75 - GCUCACUGCUCUAUCUGUCAGA - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146