miRBase entry: bra-MIR168a

Stem-loop bra-MIR168a


Accession
MI0030557
Description
Brassica rapa bra-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
8 open access papers mention bra-MIR168a
(54 sentences)

Sequence

uuacggcggccucugacUCGCUUGGUGCAGGUCGGGAAcugauuggcugacaccgccacguggcuuuccaugguuggcuugugagcagggaucggauCCCGCCUUGUAUCAAGUGAAUccgaguccgacguga
(((((.(((.(((.((.((((((((((((((.(((((.((((((.(((.(((..(((((((((....)))))..)))).))).)))...)))))).))))).)))))))))))))).)).))).))).)))))

Structure
     g   c   u  c              U     A      --g   g   cc    --     c 
uuacg cgg cuc ga UCGCUUGGUGCAGG CGGGA cugauu   gcu aca  gcca  cgugg u
||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||  
agugc gcc gag cU AGUGAACUAUGUUC GCCCu ggcuag   cga ugu  cggu  guacc u
     a   u   c  A              C     a      gga   g   -u    ug     u 


Annotation confidence Not enough data
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Genome context
chrA6: 25084101-25084233 [+]

Database links

Mature bra-miR168a-5p

Accession MIMAT0035836
Description Brassica rapa bra-miR168a-5p mature miRNA
Sequence 18 - UCGCUUGGUGCAGGUCGGGAA - 38
Evidence experimental
Illumina [1]

Mature bra-miR168a-3p

Accession MIMAT0035837
Description Brassica rapa bra-miR168a-3p mature miRNA
Sequence 98 - CCCGCCUUGUAUCAAGUGAAU - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146