miRBase entry: bra-MIR390

Stem-loop bra-MIR390


Accession
MI0030559
Description
Brassica rapa bra-MIR390 precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
6 open access papers mention bra-MIR390
(12 sentences)

Sequence

guagagaagaaucuguaAAGCUCAGGAGGGAUAGCGCCaucaugaucacacacaucgauauuuuuggCGCUGUCCAUCCUGAGUUUCAuuggcucuucuuacuac
((((((((((.((.((.((((((((((.(((((((((((..(..(((.........)))..)..))))))))))).)))))))))).)).)).))))))..))))

Structure
    --      a  u  a          G           uc ug   aca 
guag  agaaga uc gu AAGCUCAGGA GGAUAGCGCCa  a  auc   c
||||  |||||| || || |||||||||| |||||||||||  |  |||   a
cauc  ucuucu gg uA UUUGAGUCCU CCUGUCGCggu  u  uag   c
    au      c  u  C          A           uu ua   cua 


Annotation confidence Not enough data
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Genome context
chrA4: 16514660-16514764 [+]

Database links

Mature bra-miR390-5p

Accession MIMAT0035840
Description Brassica rapa bra-miR390-5p mature miRNA
Sequence 18 - AAGCUCAGGAGGGAUAGCGCC - 38
Evidence experimental
Illumina [1]

Mature bra-miR390-3p

Accession MIMAT0035841
Description Brassica rapa bra-miR390-3p mature miRNA
Sequence 68 - CGCUGUCCAUCCUGAGUUUCA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146