miRBase entry: bra-MIR395b

Stem-loop bra-MIR395b


Accession
MI0030562
Description
Brassica rapa bra-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
7 open access papers mention bra-MIR395b
(16 sentences)

Sequence

auguuuccuagaGUUCCUCUGAGCACUUCAUUGgagauaccauuuauuuucuaucaaaauguauuccaCUGAAGUGUUUGGGGGAACUCcugga
.....(((..((((((((((((((((((((.(((((.(((.((((...........)))))))))))).))))))))))))))))))))..)))

Structure
auguu   ua                    U     a   c    auuu 
     ucc  gaGUUCCUCUGAGCACUUCA UGgag uac auuu    u
     |||  |||||||||||||||||||| ||||| ||| ||||    c
     agg  CUCAAGGGGGUUUGUGAAGU accuu aug uaaa    u
-----   uc                    C     -   -    acua 


Annotation confidence Not enough data
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Genome context
chrA7: 18563029-18563122 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bra-MIR395b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bra-miR395b-5p

Accession MIMAT0035846
Description Brassica rapa bra-miR395b-5p mature miRNA
Sequence 13 - GUUCCUCUGAGCACUUCAUUG - 33
Evidence experimental
Illumina [1]

Mature bra-miR395b-3p

Accession MIMAT0035847
Description Brassica rapa bra-miR395b-3p mature miRNA
Sequence 69 - CUGAAGUGUUUGGGGGAACUC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146