miRBase entry: bra-MIR860

Stem-loop bra-MIR860


Accession
MI0030569
Description
Brassica rapa bra-MIR860 precursor miRNA
Gene family
MIPF0001176; MIR860

Literature search
1 open access papers mention bra-MIR860
(1 sentences)

Sequence

uggucaaguguaauguAUGUAGUCCAAUCUAUUGAAGuacuagcacaccaucucuagugagaugaugugguugaguaguUCAAUACAUUGGACUACAUAUauuacuuuugaucaa
((((((((.(((((((((((((((((((.(((((((.((((..((((.((((((....)))))).))))....)))).))))))).))))))))))))))))))).)))))))).

Structure
-        u                   C       G    --ag    c      u 
 uggucaag guaauguAUGUAGUCCAAU UAUUGAA uacu    caca caucuc a
 |||||||| ||||||||||||||||||| ||||||| ||||    |||| ||||||  
 acuaguuu cauuaUAUACAUCAGGUUA AUAACUu auga    gugu guagag g
a        u                   C       g    guug    a      u 


Annotation confidence Not enough data
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Genome context
chrA6: 17845504-17845618 [+]

Database links

Mature bra-miR860-5p

Accession MIMAT0035860
Description Brassica rapa bra-miR860-5p mature miRNA
Sequence 17 - AUGUAGUCCAAUCUAUUGAAG - 37
Evidence experimental
Illumina [1]

Mature bra-miR860-3p

Accession MIMAT0035861
Description Brassica rapa bra-miR860-3p mature miRNA
Sequence 80 - UCAAUACAUUGGACUACAUAU - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146