miRBase entry: bra-MIR164d

Stem-loop bra-MIR164d


Accession
MI0030572
Description
Brassica rapa bra-MIR164d precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
10 open access papers mention bra-MIR164d
(24 sentences)

Sequence

guaucacuugcUGGAGAAGCAGGGCACGUGCGaacaaaugaguuugagcaguacauuuugaucaaauauucgCACGUGUUCUACUACUCCAACacguguaucuccccuuc
....(((.((.(((((.((.((((((((((((((.......((((((.(((......))).)))))).)))))))))))))).)).))))).)).)))............

Structure
--------guau   u  c     A  C              caaauga      g   ua 
            cac ug UGGAG AG AGGGCACGUGCGaa       guuuga cag  c
            ||| || ||||| || ||||||||||||||       |||||| |||   
            gug aC ACCUC UC UCUUGUGCACgcuu       uaaacu guu  a
cuuccccucuau   c  A     A  A              ------a      a   uu 


Annotation confidence Not enough data
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Genome context
chrA6: 18241365-18241474 [-]

Database links

Mature bra-miR164d-5p

Accession MIMAT0035866
Description Brassica rapa bra-miR164d-5p mature miRNA
Sequence 12 - UGGAGAAGCAGGGCACGUGCG - 32
Evidence experimental
Illumina [1]

Mature bra-miR164d-3p

Accession MIMAT0035867
Description Brassica rapa bra-miR164d-3p mature miRNA
Sequence 73 - CACGUGUUCUACUACUCCAAC - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146