miRBase entry: bra-MIR164e

Stem-loop bra-MIR164e


Accession
MI0030574
Description
Brassica rapa bra-MIR164e precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
10 open access papers mention bra-MIR164e
(24 sentences)

Sequence

guaggugagaaccuccauguUGGAGAAGCAGGGCACGUGCAAaccaaaaaacaugaaaucuguuucauaugcuuugCACGUGCUCCCCUCCUCCAACaugagcuccucaccauu
...((((((...(((.(((((((((.((..(((((((((((((.((..(((((.......)))))....)).)))))))))))))..)).))))))))))))...))))))...

Structure
gua      aac   c         A  CA             c  --aa     ug 
   ggugag   cuc auguUGGAG AG  GGGCACGUGCAAa ca    aaaca  a
   ||||||   ||| ||||||||| ||  ||||||||||||| ||    |||||  a
   ccacuc   gag uaCAACCUC UC  CUCGUGCACguuu gu    uuugu  a
uua      cuc   -         C  CC             c  auac     cu 


Annotation confidence Not enough data
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Genome context
chrA1: 25366674-25366787 [-]

Database links

Mature bra-miR164e-5p

Accession MIMAT0035870
Description Brassica rapa bra-miR164e-5p mature miRNA
Sequence 21 - UGGAGAAGCAGGGCACGUGCAA - 42
Evidence experimental
Illumina [1]

Mature bra-miR164e-3p

Accession MIMAT0035871
Description Brassica rapa bra-miR164e-3p mature miRNA
Sequence 77 - CACGUGCUCCCCUCCUCCAAC - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146