Stem-loop sequence chi-mir-1

Accession

MI0030587 (change log)

Description

Capra hircus miR-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

9 open access papers mention chi-mir-1
(48 sentences)

Stem-loop

   -----ua    -    gg a                gc     ---   a 
5'        ccug cuug  a acauacuucuuuaugu  ccaua   ugg c
          |||| ||||  | ||||||||||||||||  |||||   ||| c
3'        gggc ggac  u uguaugaagaaaugua  gguau   auc u
   cucucaa    u    uu a                -a     cga   g 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CHIR_2.0; GCA_000317765.2)	Overlapping transcripts
chr13: 55656779-55656871 [-]	intergenic
chr13: 55661799-55661891 [-]	intergenic
chr13: 55663345-55663437 [-]	intergenic

Database links

• miRBase Tracker:MI0030587

Mature sequence chi-miR-1

• Accession: MIMAT0035896
• Sequence: 54 - uggaauguaaagaaguauguau - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).