Stem-loop chi-mir-100

Accession

MI0030588

Description

Capra hircus chi-mir-100 precursor miRNA

Literature search

33 open access papers mention chi-mir-100
(75 sentences)

Sequence

4973249 reads, 14765.0 reads per million, 36 experiments

aggccuguugccacaAACCCGUAGAUCCGAACUUGUGgugauagugcacaCAAGCUUGUGUCUAUAGGUAUGUGucugugggc
..(((((..(.((((.(((.((((((.(((.((((((((......)).)))))).))).)))))).))).)))).)..)))))

Structure

ag     uu c    A   C      C   A      -  ga 
  gccug  g caca ACC GUAGAU CGA CUUGUG gu  u
  |||||  | |||| ||| |||||| ||| |||||| ||   
  cgggu  c GUGU UGG UAUCUG GUU GAACac cg  a
--     gu u    A   A      U   C      a  ug 

Annotation confidence High

Genome context

chr15: 35916181-35916263 [-]

Mature chi-miR-100-5p

• Accession: MIMAT0035897
• Description: Capra hircus chi-miR-100-5p mature miRNA
• Sequence: 16 - AACCCGUAGAUCCGAACUUGUG - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-100-3p

• Accession: MIMAT0035898
• Description: Capra hircus chi-miR-100-3p mature miRNA
• Sequence: 51 - CAAGCUUGUGUCUAUAGGUAUGUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40