miRBase entry: chi-mir-10a

Stem-loop chi-mir-10a


Accession
MI0030596
Description
Capra hircus chi-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
5 open access papers mention chi-mir-10a
(7 sentences)

Sequence

aagaagaucugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuugugaucaCAAAUUCGUAUCUAGGGGAAUauguaguugacauaaacacuccgcucauuuuuu
.((..((..(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))).))..))........

Structure
-------a  aa  uc   --c    uu        A    G     C          uaaggaa 
        ag  ga  ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg       u
        ||  ||  |||   ||||  |||||||| |||| ||||| ||||||||||        
        uc  cu  aca   acag  gauguaUA GGGG AUCUA GCUUAAACac       u
uuuuuuac  gc  -c   aau    uu        A    -     U          uaguguu 


Annotation confidence Not enough data
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Genome context
chr19: 39033927-39034047 [+]

Database links

Mature chi-miR-10a-5p

Accession MIMAT0035911
Description Capra hircus chi-miR-10a-5p mature miRNA
Sequence 27 - UACCCUGUAGAUCCGAAUUUGU - 48
Evidence experimental
Illumina [1]

Mature chi-miR-10a-3p

Accession MIMAT0035912
Description Capra hircus chi-miR-10a-3p mature miRNA
Sequence 68 - CAAAUUCGUAUCUAGGGGAAU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40