Stem-loop chi-mir-10b

Accession

MI0030597

Description

Capra hircus chi-mir-10b precursor miRNA

Literature search

8 open access papers mention chi-mir-10b
(29 sentences)

Sequence

caguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccucguagucACAGAUUCGAUUCUAGGGGAAUauauggucgaugcaaaaacuucac
......(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))............

Structure

------caguaa     u        A    G     C          u g   c 
            cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
            ||||| |||||||| |||| ||||| |||||||||| | |||  
            guagc gguauaUA GGGG AUCUU GCUUAGACAc u aug u
cacuucaaaaac     u        A    -     A          - g   c 

Annotation confidence Low

Genome context

chr2: 21871351-21871454 [-]

Mature chi-miR-10b-5p

• Accession: MIMAT0035913
• Description: Capra hircus chi-miR-10b-5p mature miRNA
• Sequence: 20 - UACCCUGUAGAACCGAAUUUGU - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-10b-3p

• Accession: MIMAT0035914
• Description: Capra hircus chi-miR-10b-3p mature miRNA
• Sequence: 59 - ACAGAUUCGAUUCUAGGGGAAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40