Stem-loop chi-mir-133a

Accession

MI0030618

Description

Capra hircus chi-mir-133a precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

8 open access papers mention chi-mir-133a
(33 sentences)

Sequence

cgggaccgaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucgauggaUUUGGUCCCCUUCAACCAGCUGUagcugugcauugau
........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...

Structure

cgggaccg     uuu    a       AA  U  A        aacug 
        aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
        |||||   |||| |||||||  || || ||||||||      
        uuacg   cgaU UCGACCA  UU CC UGGUUUag     u
-----uag     ugu    G       AC  C  C        guagc 

Annotation confidence Not enough data

Genome context

chr13: 55645237-55645331 [-]

Mature chi-miR-133a-5p

• Accession: MIMAT0035947
• Description: Capra hircus chi-miR-133a-5p mature miRNA
• Sequence: 22 - AGCUGGUAAAAUGGAACCAAAU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-133a-3p

• Accession: MIMAT0035948
• Description: Capra hircus chi-miR-133a-3p mature miRNA
• Sequence: 59 - UUUGGUCCCCUUCAACCAGCUGU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40