miRBase entry: chi-mir-133b

Stem-loop chi-mir-133b


Accession
MI0030619
Description
Capra hircus chi-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
7 open access papers mention chi-mir-133b
(18 sentences)

Sequence

ugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUacagcagggcuggcaaagcccaguccuuggaga
.....(((.(((.((..((....(((((......))))))).)).)))))).........(((((....((....))((((((((......))))))))))))).

Structure
ugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCC     ------------------ACCA  U 
                                                            CUUCA                      GC a
                                                            |||||                      ||  
                                                            gaggu                      cg c
-----------------------------------------------------------a     uccugacccgaaacggucggga  a 


Annotation confidence Not enough data
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Genome context
chr23: 25419918-25420022 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-133b

Accession MIMAT0035949
Description Capra hircus chi-miR-133b mature miRNA
Sequence 52 - UUUGGUCCCCUUCAACCAGCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40