miRBase entry: chi-mir-1343

Stem-loop chi-mir-1343


Accession
MI0030620
Description
Capra hircus chi-mir-1343 precursor miRNA
Gene family
MIPF0001206; mir-1343

Literature search
2 open access papers mention chi-mir-1343
(2 sentences)

Sequence

ugcuggcuucggugcuggggagcggcccccgggcgggccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCuccgggc
.....(((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).))))))

Structure
ugcug   u   u  u    a    c       -c     ucu 
     gcu cgg gc gggg gcgg ccccggg  gggcc   g
     ||| ||| || |||| |||| |||||||  |||||    
     cgg gcc CG UCUC CGCC GGGGUCC  cccgg   c
-----   -   u  C    A    C       UC     ucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr15: 68128730-68128810 [+]

Database links

Mature chi-miR-1343

Accession MIMAT0035950
Description Capra hircus chi-miR-1343 mature miRNA
Sequence 53 - CUCCUGGGGCCCGCACUCUCGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40