Stem-loop sequence chi-mir-143

Accession

MI0030629 (change log)

Description

Capra hircus miR-143 stem-loop

Gene family

MIPF0000094; mir-143

Literature search

15 open access papers mention chi-mir-143
(44 sentences)

Stem-loop

   ------gcguccug      ag      g         g      u  -  ag 
5'               ucuccc  ccugag ugcagugcu caucuc gg uc  u
                 ||||||  |||||| ||||||||| |||||| || ||   
3'               agaggg  gggcuc augucacga guagag cu ag  u
   cgacaucuuguuga      aa      g         a      u  g  gg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr7: 60508524-60508624 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-143

• chi-mir-143: chr7: 60508524-60508624 [+]
• chi-mir-145: chr7: 60509933-60510020 [+]

Database links

• miRBase Tracker:MI0030629

Mature sequence chi-miR-143-5p

• Accession: MIMAT0035963
• Sequence: 22 - ggugcagugcugcaucucugg - 42
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-143-3p

• Accession: MIMAT0035964
• Sequence: 56 - ugagaugaagcacuguagcucg - 77
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).