miRBase entry: chi-mir-146b

Stem-loop chi-mir-146b


Accession
MI0030634
Description
Capra hircus chi-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
4 open access papers mention chi-mir-146b
(6 sentences)

Sequence

uaagagaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGCUGUgagcucuagcaaaUGCCCUAGGGACUCAGUUCUGGUgcccggcugcgcuacaccaucaau
...((......((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).....))...

Structure
uaa  gaacuu    -  -  u   u  G        A    A    C   ga  u 
   ga      uggc ca cc ggc cU AGAACUGA UUCC UAGG UGU  gc c
   ||      |||| || || ||| || |||||||| |||| |||| |||  ||  
   cu      aucg gu gg ccg GG UCUUGACU AGGG AUCC GUa  cg u
uaa  -accac    c  c  c   U  -        C    -    C   aa  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr26: 22970956-22971064 [+]

Database links

Mature chi-miR-146b-5p

Accession MIMAT0035972
Description Capra hircus chi-miR-146b-5p mature miRNA
Sequence 26 - UGAGAACUGAAUUCCAUAGGCUGU - 49
Evidence experimental
Illumina [1]

Mature chi-miR-146b-3p

Accession MIMAT0035973
Description Capra hircus chi-miR-146b-3p mature miRNA
Sequence 63 - UGCCCUAGGGACUCAGUUCUGGU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40