miRBase entry: chi-mir-148b

Stem-loop chi-mir-148b


Accession
MI0030637
Description
Capra hircus chi-mir-148b precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
4 open access papers mention chi-mir-148b
(8 sentences)

Sequence

aucauuuccagucaccguuagcauuugagguGAAGUUCUGUUAUACACUCAGGCuguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucuagc
................(..(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).)))..)....

Structure
aucauuuccagucacc uu   a                  U  A    CA    guggc 
                g  agc uuugagguGAAGUUCUGU AU CACU  GGCu     u
                |  ||| |||||||||||||||||| || ||||  ||||     c
                c  ucg aagcucUGUUUCAAGACA UA GUGA  CUga     u
------------cgau uu   a                  C  C    --    aaguc 


Annotation confidence Not enough data
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Genome context
chr5: 26340976-26341084 [-]

Database links

Mature chi-miR-148b-5p

Accession MIMAT0035978
Description Capra hircus chi-miR-148b-5p mature miRNA
Sequence 32 - GAAGUUCUGUUAUACACUCAGGC - 54
Evidence experimental
Illumina [1]

Mature chi-miR-148b-3p

Accession MIMAT0035979
Description Capra hircus chi-miR-148b-3p mature miRNA
Sequence 71 - UCAGUGCAUCACAGAACUUUGU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40