miRBase entry: chi-mir-154b

Stem-loop chi-mir-154b


Accession
MI0030642
Description
Capra hircus chi-mir-154b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
6 open access papers mention chi-mir-154b
(10 sentences)

Sequence

agagauacuuggugguacuugaagAGAGGUCUUCCAUGGUGCAUUCgcuuuauucuuugacgaAUCAUACAUGGUUGACCUUUUUUuagguaucaaaucuggccuugaa
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))))........)))...

Structure
--a   auacuugg                   UU     -   C     - uuua 
   gag        ugguacuugaagAGAGGUC  CCAUG GUG AUUCg c    u
   |||        |||||||||||||||||||  ||||| ||| ||||| |     
   uuc        acuauggauUUUUUUCCAG  GGUAC UAC UAagc g    u
aag   cggucuaa                   UU     A   -     a uuuc 


Annotation confidence Not enough data
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Genome context
chr21: 67137892-67138000 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from chi-mir-154b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-154b-5p

Accession MIMAT0035986
Description Capra hircus chi-miR-154b-5p mature miRNA
Sequence 25 - AGAGGUCUUCCAUGGUGCAUUC - 46
Evidence experimental
Illumina [1]

Mature chi-miR-154b-3p

Accession MIMAT0035987
Description Capra hircus chi-miR-154b-3p mature miRNA
Sequence 64 - AUCAUACAUGGUUGACCUUUUUU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40