Stem-loop sequence chi-mir-16a

Accession

MI0030646 (change log)

Description

Capra hircus miR-16a stem-loop

Gene family

MIPF0000006; mir-15

Literature search

6 open access papers mention chi-mir-16a
(13 sentences)

Stem-loop

         ag   c          -  a          u   gauu 
5' gucagc  ugc uuagcagcac gu aauauuggag uaa    c
   ||||||  ||| |||||||||| || |||||||||| |||     
3' caguug  aug agucgucgug ca uuaugaccuc auu    u
         ga   a          u  a          u   aaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CHIR_2.0; GCA_000317765.2): chr12: 18725843-18725931 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from chi-mir-16a

• chi-mir-15a: chr12: 18725978-18726072 [-]
• chi-mir-16a: chr12: 18725843-18725931 [-]

Database links

• miRBase Tracker:MI0030646

Mature sequence chi-miR-16a-5p

• Accession: MIMAT0035994
• Sequence: 14 - uagcagcacguaaauauuggag - 35
• Evidence: experimental; Illumina [1]

Mature sequence chi-miR-16a-3p

• Accession: MIMAT0035995
• Sequence: 47 - aaauuaucuccaguauuaacugugcugc - 74
• Evidence: experimental; Illumina [1]

References

1. PMID:23981187 "Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing" Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J Reprod Domest Anim. 49:32-40(2014).