Stem-loop chi-mir-16a

Accession

MI0030646

Description

Capra hircus chi-mir-16a precursor miRNA

Literature search

9 open access papers mention chi-mir-16a
(18 sentences)

Sequence

4257330 reads, 12799.0 reads per million, 36 experiments

gucagcagugccuUAGCAGCACGUAAAUAUUGGAGUuaagauucuaaaauuaucUCCAGUAUUAACUGUGCUGCUGaaguaagguugac
((((((..(((.((((((((((((.((((((((((.(((..........))).)))))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A          U   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGGAG uaa    c
||||||  ||| |||||||||| || |||||||||| |||     
caguug  aug aGUCGUCGUG CA UUAUGACCUc auu    u
      ga   a          U  A          u   aaaa 

Annotation confidence Medium

Genome context

chr12: 18725843-18725931 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-16a

Mature chi-miR-16a-5p

• Accession: MIMAT0035994
• Description: Capra hircus chi-miR-16a-5p mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGAGU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-16a-3p

• Accession: MIMAT0035995
• Description: Capra hircus chi-miR-16a-3p mature miRNA
• Sequence: 55 - UCCAGUAUUAACUGUGCUGCUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40