miRBase entry: chi-mir-181d

Stem-loop chi-mir-181d


Accession
MI0030652
Description
Capra hircus chi-mir-181d precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
4 open access papers mention chi-mir-181d
(8 sentences)

Sequence

uccccucccuuaggccacagcaaaggucacaaucAACAUUCAUUGUUGUCGGUGGGUugugacggagaccagacccaccgagggaugaaugucacuguggcugggccagacacagccucgggggaauggg
.(((.((((((((((....((...(((((((....(((((((((....((((((((((.((........))))))))))))..)))))))))...)))))))..))........)))).))))))..)))

Structure
u   -c      -    ----caca  aaa       aucA         GUUG          g  acg 
 ccc  ucccuu aggc        gc   ggucaca    ACAUUCAUU    UCGGUGGGUu ug   g
 |||  |||||| ||||        ||   |||||||    |||||||||    |||||||||| ||    
 ggg  aggggg uccg        cg   ucggugu    uguaaguag    agccacccag ac   a
-   ua      c    acacagac  -gg       -cac         --gg          -  cag 


Annotation confidence Not enough data
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Genome context
chr7: 10034037-10034166 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-181d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-181d

Accession MIMAT0036005
Description Capra hircus chi-miR-181d mature miRNA
Sequence 35 - AACAUUCAUUGUUGUCGGUGGGU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40