Stem-loop chi-mir-190a

Accession

MI0030662

Description

Capra hircus chi-mir-190a precursor miRNA

Gene family

MIPF0000076; mir-190

Literature search

1 open access papers mention chi-mir-190a
(1 sentences)

Sequence

accuggaugccuuucugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUUguuauuuaauccaaCUAUAUAUCAAACAUAUUCCUacagugucuugcccugucuccggggguuccuaauauagcucauaaggcaacagg
.((((..((((((...((((((..(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).))))..(((((....)))))............))....)))))).))))

Structure

a    ga      -ucu  ----------------------------    cu     -U                UA     uuau 
 ccug  ugccuu    gc                            aggc  cugug  GAUAUGUUUGAUAUAU  GGUUg    u
 ||||  ||||||    ||                            ||||  |||||  ||||||||||||||||  |||||     
 ggac  acggaa    cg                            ucug  gacaU  UUAUACAAACUAUAUA  UCaac    u
-    -a      uacu  auauaauccuugggggccucugucccgu    -u     CC                --     cuaa 

Annotation confidence Not enough data

Genome context

chr10: 45829591-45829731 [-]

Mature chi-miR-190a-5p

• Accession: MIMAT0036019
• Description: Capra hircus chi-miR-190a-5p mature miRNA
• Sequence: 30 - UGAUAUGUUUGAUAUAUUAGGUU - 52
• Evidence: experimental ; Illumina [1]

Mature chi-miR-190a-3p

• Accession: MIMAT0036020
• Description: Capra hircus chi-miR-190a-3p mature miRNA
• Sequence: 67 - CUAUAUAUCAAACAUAUUCCU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40