Stem-loop chi-mir-200a

Accession

MI0030679

Description

Capra hircus chi-mir-200a precursor miRNA

Literature search

91 open access papers mention chi-mir-200a
(320 sentences)

Sequence

174759 reads, 577.0 reads per million, 36 experiments

gggccucuguggaCAUCUUACCGGACAGUGCUGGAUuucucagcucaacucUAACACUGUCUGGUAACGAUGuucaaaggugacccac
((((.(((.(((((((((((((((((((((.((((.((........)).)))).))))))))))))).)))))))).))).).)))..

Structure

--   - c   g        -             C    U  cuc 
  ggg c ucu uggaCAUC UUACCGGACAGUG UGGA uu   a
  ||| | ||| |||||||| ||||||||||||| |||| ||    
  ccc g gga acuuGUAG AAUGGUCUGUCAC AUcu aa   g
ca   a u   a        C             A    c  cuc 

Annotation confidence High

Genome context

AJPT02077529.1: 1264-1351 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-200a

Mature chi-miR-200a-5p

• Accession: MIMAT0058950
• Description: Capra hircus chi-miR-200a-5p mature miRNA
• Sequence: 14 - CAUCUUACCGGACAGUGCUGGAU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-200a-3p

• Accession: MIMAT0036045
• Description: Capra hircus chi-miR-200a-3p mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40